ExperimentalWe used data and feedback to make a user-friendly site. We’d love your feedback.
Back to data.ca.gov.

Interagency Ecological Program: Fish catch and associated water quality for the Fall Midwater Trawl Survey, Sacramento-San Joaquin Delta, 1967-2024

The Interagency Ecological Program’s (IEP) Fall Midwater Trawl Survey (FMWT) is a long-term monitoring survey conducted by the California Department of Fish and Wildlife (CDFW) and has sampled annually since its inception in 1967, with the exceptions of 1974 and 1979, when sampling was not conducted. The FMWT was initiated to determine the relative abundance and distribution of age-0 Striped Bass (Morone saxatilis) in the San Francisco Estuary (California, United States), but the data has also been used for other upper estuary pelagic species, including Delta Smelt (Hypomesus transpacificus), Longfin Smelt (Spirinchus thaleichthys), American Shad (Alosa sapidissima), Splittail (Pogonichthys macrolepidotus), and Threadfin Shad (Dorosoma petenense). The FMWT currently samples 130 stations each month from September to December and a subset of this data is used to calculate an annual abundance index. These 130 stations range from San Pablo Bay upstream to Stockton on the San Joaquin River, and West Sacramento on the Sacramento Deep Water Ship Channel. FMWT sampling data includes 193 unique station locations throughout the San Francisco Estuary; 63 are not currently sampled. Most stations no longer sampled occur in South and Central San Francisco Bay (1968-1979), with others located in San Pablo Bay and upstream into the Delta. There are catch records for stations that were sampled only once. Data users are encouraged to look at station frequency over time to understand when and where sampling occurred. Sampling takes approximately 14 days per month to complete. Historically, FMWT sampling occasionally began as early as July (1972) or August (1968-1973, 1993-1994, 1996-1997) and sometimes continued past December to March (1968-1973, 1978, 1991-2001) or beyond (1992-1995). The Spring Midwater Trawl (SMWT) was a modified survey created to continue sampling January-March to track movements of mature adult delta smelt from 1991-2001. SMWT was replaced in 2002 with the more effective Spring Kodiak Trawl (SKT). All fish, shrimp, and jellyfish are identified and enumerated. In addition, the crew measures water temperature (°C), specific conductance (µs/cm), Secchi depth, and Turbidity (NTU). FMWT also currently collects meso- (copepods and cladocerans) and macro- (mysids and amphipods) zooplankton samples at 35 stations. Midwater and zooplankton tows conducted by FMWT allow for determination of available zooplankton prey resources. FMWT equipment and methods have remained consistent since the survey's inception, which allows annual abundance indices to be compared across time. Monthly and annual abundance indices are calculated using catch data from 100 “index” stations grouped into 14 regional “areas”. Monthly indices are calculated by averaging catch per tow for index stations in each regional area, multiplying these means by their respective weighting factors (i.e., a scalar based on water volume) for each area and summing these products for all 14 areas. Annual abundance indices are the sum of the 4 (September-December) monthly indices. The FMWT catch data has been used to meet permit obligations to the State Water Resources Control Board (SW and DRCB) via Water Rights Decisions (D-1485 and D-1641) and USFWS-NMFS biological opinions for Delta Smelt (Hypomesus transpacificus), and for incidental take permits issued by CDFW for operation of Central Valley Project (CVP) and State Water Project (SWP). For more FMWT information, as well as a user copy of our Microsoft Access, please visit our website: https://wildlife.ca.gov/Conservation/Delta/Fall-Midwater-Trawl ## About This Federated Record This CNRA Open Data Platform record is based on metadata federated from the Environmental Data Initiative (EDI) Data Portal. Its purpose is to improve the discoverability of the data package through the CNRA Open Data Platform. The EDI Data Portal is the repository of record for this data package. Metadata, resource links, and supporting information displayed here may not reflect the latest updates available in EDI. Resources shown here—including Full Metadata, Provenance, and Data Quality Report—are provided to help users understand and evaluate the data package and the supporting information available from EDI. For the current data package, citation, DOI, data files, metadata, provenance, data quality documentation, revision history, and other supporting information, refer to the EDI data package landing page: https://portal.edirepository.org/nis/metadataviewer?packageid=edi.1951.1&key=vqSpNwnbe91Bi8trB5RY25CoPD4 Access requirements, permissions, and authorization policies for resources hosted by EDI are established and managed independently of the CNRA Open Data Platform.

Data files

No files available

Supporting files

Data title and descriptionAccess dataFile detailsLast updated

FMWT 1967-2024 Catch Matrix.csv

Environmental and Catch matrix for fish and invertebrates collected by the CDFW Fall Midwater Trawl Survey from 1967-2024.

CSV (EXTERNAL DOWNLOAD)
09/25/26

FMWT 1967-2024 Length Data.csv

This file contains associated catch and length data collected by the Fall Midwater Trawl Survey.

CSV (EXTERNAL DOWNLOAD)
09/25/26

Organism_Taxonomy.csv

A list of the common names and scientific classifications for organisms recorded by the Fall Midwater Trawl Survey. Also contains a quick reference for when groups were first recorded by the study as well as groupings for fish, shrimp, and jellies.

CSV (EXTERNAL DOWNLOAD)
09/25/26

FMWT_index_web.R

Script to calculate Fall Midwater Trawl indices for species of interest. Originally created March 2020 by Rosemary Hartman at CA DWR. Modified by James White March 27, 2020 for external use, updated June 2022.

R
09/25/26

FMWT_Catch_Matrix_With_Lengths.R

R script to combine the Fall Midwater Trawl catch matrix with the Fall Midwater Trawl length data.

R
09/25/26

FMWT Protocol.pdf

Extensive Fall Midwater Trawl protocol and history

PDF
09/25/26

FMWT_Station_Map.png

A map showing the FMWT stations, as well as their index designation and year incorporated.

PNG
09/25/26

Provenance Metadata

This method step describes provenance-based metadata as specified in the LTER EML Best Practices. This provenance metadata does not contain entity specific information.

HTML
09/25/26

Full Metadata

A link to the original metadata web page on the EDI Portal

HTML
09/25/26

Dataset Quality Report

A link to the EDI Quality Metadata Page

HTML
09/25/26

API endpoint

Dataset Name

Use the query web API to retrieve data with a set of basic parameters. Copy the API endpoint you need to start.

Usage documentation